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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36967792_36969521_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36967792 - 36969521
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TACAGTGGAACT
Flanking Amino Acid:
RIKGLSPFDKVVGGMTWCIT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
74.1
0.6
1
69
38.9
Major PPT
71.8
0.49
1
69.3
36.8
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
40.3
-0.6
2.3
58.24
44.7

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725
ENSAPLT00000036029
36937327 - 36970627
33301