Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36980859_36993552_R

Intron Information:

Intron Rank:

130000

Intron Class:

major

Intron Phase:

Intron Coordinates:

36980859 - 36993552

Intron Length:

12694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAA

U12 Branch Point Sequence:

TCTTACTAAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

79.7

Major BPS

77.5

0.68

0.8

76.2

24.6

Major PPT

85.2

0.79

0.7

79.4

26.2

Minor 5ss

42.9

-0.8

2.7

55.2

42.1

Minor BPS

50.2

-0.1

61.49

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019370

36980695 - 36994108

13414