Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36983249_36987867_F

Intron Information:

Intron Rank:

125590

Intron Class:

major

Intron Phase:

Intron Coordinates:

36983249 - 36987867

Intron Length:

4619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTACTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ATTCTCTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

82.1

24.6

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

83.6

0.75

0.8

78.3

28.9

Minor 5ss

31.3

-2.1

2.7

33.5

35.5

Minor BPS

63.4

0.5

1.6

79.24

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047945

36982794 - 36988051

5258