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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36993590_36994042_R

Intron Information:

Intron Rank:
130001
Intron Class:
major
Intron Phase:
Intron Coordinates:
36993590 - 36994042
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.4
32.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.2
0.88
0.6
83.6
24.7
Minor 5ss
44.1
-0.6
2.9
58.3
46.6
Minor BPS
76.7
0.84
1.6
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017134
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019370
36980695 - 36994108
13414