About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3703302_3704285_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3703302 - 3704285
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGCTGTTTACT
Flanking Amino Acid:
VTYKYTYRTTKSKCGERDEL
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
81.2
0.7
0.8
73.5
37.1
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
48.1
-0
2.3
72.84
44

Associated Gene:

Gene:
NAB1
Ensembl Gene ID:
ENSAPLG00000012579
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013123
3692936 - 3713843
20908