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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3710715_3713735_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3710715 - 3713735
Intron Length:
3021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TTACTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTGTTTTTACT
Flanking Amino Acid:
GGGAGGGRPLVLSSVMASAL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
56.4
42.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.2
0.72
0.9
76.7
37.2
Minor 5ss
35.4
-1.7
3.6
46.4
44.5
Minor BPS
57
0.3
1.7
74.6
42.8

Associated Gene:

Gene:
NAB1
Ensembl Gene ID:
ENSAPLG00000012579
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013123
3692936 - 3713843
20908