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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37108365_37108776_F

Intron Information:

Intron Rank:
140853
Intron Class:
major
Intron Phase:
Intron Coordinates:
37108365 - 37108776
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAAGG
5'SS Class:
major
3'SS Sequence:
CTGTCTCTAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
ACTGCCTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
64.2
41.7
Major BPS
50.1
0
1.4
63
43.2
Major PPT
74.3
0.55
0.9
70.3
35
Minor 5ss
33.5
-1.9
2.8
39.9
45.7
Minor BPS
48
-0
2
66.67
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025862
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026873
37107942 - 37115601
7660