Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37108859_37112628_F

Intron Information:

Intron Rank:

140854

Intron Class:

major

Intron Phase:

Intron Coordinates:

37108859 - 37112628

Intron Length:

3770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATGGA

5'SS Class:

major

3'SS Sequence:

CTTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

GCTTTGGTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

67.5

37.9

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

89.9

0.9

0.7

29.4

Minor 5ss

31.5

-2.1

3.2

37.6

42.2

Minor BPS

47.1

-0.1

2.6

71.56

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026873

37107942 - 37115601

7660