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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37304543_37322819_F

Intron Information:

Intron Rank:
139846
Intron Class:
major
Intron Phase:
Intron Coordinates:
37304543 - 37322819
Intron Length:
18277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AACTTACTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GGTCATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.7
0.47
0.9
66.7
38.7
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
63.5
0.5
1.5
76.47
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025184
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021399
37298309 - 37330629
32321