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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37322935_37330378_F

Intron Information:

Intron Rank:
139847
Intron Class:
major
Intron Phase:
Intron Coordinates:
37322935 - 37330378
Intron Length:
7444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
56.1
0.27
1.5
72.24
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025184
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021399
37298309 - 37330629
32321