About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3733984_3735166_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3733984 - 3735166
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGG
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAAGTTAACT
Flanking Amino Acid:
LAGAGAGAGAGENCSVLKEG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.2
51.9
45.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
34.3
-1.8
3.5
47.6
47.8
Minor BPS
54.3
0.21
2.3
79
42.5

Associated Gene:

Gene:
NEMP2
Ensembl Gene ID:
ENSAPLG00000012408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012921
3733887 - 3744562
10676