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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3735283_3736934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3735283 - 3736934
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTGTTTGATT
Flanking Amino Acid:
HLQYIWSTVEVKINSTETFR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.2
0.61
0.9
74.7
40
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
61.9
0.46
1.7
79.26
37.5

Associated Gene:

Gene:
NEMP2
Ensembl Gene ID:
ENSAPLG00000012408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012921
3733887 - 3744562
10676