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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3737164_3737337_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3737164 - 3737337
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
AACTCTAAAGTC
Flanking Amino Acid:
ELYIVSVKREMLDGKLLFLF
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
81.2
0.7
0.7
80
25.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
40.5
-0.7
1.9
46.31
36.9

Associated Gene:

Gene:
NEMP2
Ensembl Gene ID:
ENSAPLG00000012408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012921
3733887 - 3744562
10676