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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3737411_3738420_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3737411 - 3738420
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
FLFHFAHSLSRNTKFFYLSG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
NEMP2
Ensembl Gene ID:
ENSAPLG00000012408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012921
3733887 - 3744562
10676