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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37407903_37409826_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37407903 - 37409826
Intron Length:
1924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAG
U12 Branch Point Sequence:
CGTTTGTCCACT
Flanking Amino Acid:
SYRRLSPDGLEPRSQRKPST
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
49.4
-0
1.6
48.8
46.3
Major PPT
76.5
0.6
0.9
73.5
41.9
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
42.6
-0.5
2.5
63.97
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000588
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018311
37407722 - 37417682
9961