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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37413410_37413801_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
37413410 - 37413801
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCACCCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGCATTTCACA
Flanking Amino Acid:
PGQPGQKGEAGPAGEQGPPG
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
57.6
0.17
1
53.5
36.7
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49.4
-0
1.9
65.47
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000588
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029070
37408649 - 37417682
9034
ENSAPLT00000018311
37407722 - 37417682
9961
ENSAPLT00000000656
37408649 - 37417682
9034
ENSAPLT00000031489
37408649 - 37417682
9034