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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37414717_37414877_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37414717 - 37414877
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTGCTTTCCACA
Flanking Amino Acid:
KGTKGDQGPYGSPGPIGQKG
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.5
0.48
0.9
65.4
35.3
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
46.2
-0.3
1.9
60.11
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000588
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018311
37407722 - 37417682
9961
ENSAPLT00000000656
37408649 - 37417682
9034
ENSAPLT00000031489
37408649 - 37417682
9034
ENSAPLT00000029070
37408649 - 37417682
9034