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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3742166_3744336_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3742166 - 3744336
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CAAAATCCATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CCTTCCAAAATC
Flanking Amino Acid:
LAVSKLQSPHRFAGFVLGSP
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
56.7
0.15
1
52.5
41.8
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
49.8
-0
2
62.54
43.6

Associated Gene:

Gene:
NEMP2
Ensembl Gene ID:
ENSAPLG00000012408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012921
3733887 - 3744562
10676