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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37448765_37465356_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37448765 - 37465356
Intron Length:
16592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACAGCAC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
GGKAHGGNNNKVAMPAFSCT
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.1
51.2
40
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
31
-2.2
3.6
40.7
40.3
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
C1QL2
Ensembl Gene ID:
ENSAPLG00000029910
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018551
37447860 - 37466387
18528