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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37490392_37501492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37490392 - 37501492
Intron Length:
11101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCACAGTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
81.2
0.7
0.7
73.7
31.4
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
44.8
-0.3
2.3
64.52
45

Associated Gene:

Gene:
STEAP3
Ensembl Gene ID:
ENSAPLG00000000975
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026778
37490249 - 37510270
20022