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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37490867_37501492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37490867 - 37501492
Intron Length:
10626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCACAGTGAACT
Flanking Amino Acid:
FALLLPGPAQRMSGGDMAKP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
81.2
0.7
0.7
73.7
31.4
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
44.8
-0.3
2.3
64.52
45

Associated Gene:

Gene:
STEAP3
Ensembl Gene ID:
ENSAPLG00000000975
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000970
37490766 - 37510270
19505