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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37522982_37523110_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37522982 - 37523110
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTAATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GGTTCTCTAATT
Flanking Amino Acid:
KIIHQAHKSKTGELVVSLED
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.3
0.57
0.8
69.6
35.3
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
63.2
0.49
1.7
78.31
37.9

Associated Gene:

Gene:
C2orf76
Ensembl Gene ID:
ENSAPLG00000001103
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001094
37520131 - 37528263
8133