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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37530257_37530373_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37530257 - 37530373
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTCCCTCCTT
Flanking Amino Acid:
MAEAAFQKAAEEV
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
72
0.5
0.7
64.5
30.9
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
36.3
-0.9
3.6
63.6
47.2

Associated Gene:

Gene:
DBI
Ensembl Gene ID:
ENSAPLG00000008597
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008929
37530248 - 37532975
2728