About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37530492_37532193_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37530492 - 37532193

Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGG|GTACGGGCC

5'SS Class:
major

3'SS Sequence:
TTCTCTCTCTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AACTGAT

U12 Branch Point Sequence:
TTTTGCTTATTC

Flanking Amino Acid:
KQATVGDVNTDRPGMLDFKG

Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.4
0.46
1.1
61.2
39.2

Major BPS
74.7
0.61
0.9
63.4
35.6

Major PPT
85.6
0.8
0.7
84.3
23.5

Minor 5ss
29
-2.4
3.6
33.1
42.3

Minor BPS
62.6
0.37
2
77.93
38.5

Associated Gene:

Gene:
DBI

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37529698 - 37532975
3278

37530248 - 37532975
2728