Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37554752_37554842_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37554752 - 37554842

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAACGGCT

5'SS Class:

major

3'SS Sequence:

TTTCCAATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

GCTTTTCCAATT

Flanking Amino Acid:

FFWWFITLGWGAPSVFVAAW

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.4

1.2

41.7

Major BPS

71.8

0.54

1.2

32.5

Major PPT

80.9

0.7

0.8

74.7

33.6

Minor 5ss

-1.5

3.6

47.6

Minor BPS

47.3

-0.1

1.8

64.81

40.3

Associated Gene:

Gene:

SCTR

Ensembl Gene ID:

ENSAPLG00000008608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047226

37550439 - 37568239

17801

ENSAPLT00000008963

37549723 - 37568239

18517