Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37554997_37555707_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

37554997 - 37555707

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAACCCTT

5'SS Class:

weak_major

3'SS Sequence:

TCTGTTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

AGTTAATTATTC

Flanking Amino Acid:

EDTNYCEAHTAGCKLTMVFF

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.2

47.6

Major BPS

76.9

0.67

66.3

40.4

Major PPT

82.1

0.72

0.8

80.6

31.5

Minor 5ss

49.8

-0

2.9

74.9

Minor BPS

-0.2

60.09

38.7

Associated Gene:

Gene:

SCTR

Ensembl Gene ID:

ENSAPLG00000008608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047226

37550439 - 37568239

17801

ENSAPLT00000008963

37549723 - 37568239

18517