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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37574553_37574862_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37574553 - 37574862
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCCTTCCTAATC
Flanking Amino Acid:
RAVPHHLLESKIYSERYRSN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.7
39.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
83.8
0.76
0.7
80.7
24.5
Minor 5ss
44.5
-0.6
3
57.8
41.2
Minor BPS
58.2
0.24
1.7
65.95
40.4

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407