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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37574964_37576474_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37574964 - 37576474
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CATATTGTAACA
Flanking Amino Acid:
EVGKHHQQTLKLINISGDVI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89.5
0.89
0.7
84.3
30.8
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
48.2
-0.1
2
60.18
40.2

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407