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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37577333_37578413_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37577333 - 37578413
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTAGTTTCATT
Flanking Amino Acid:
ISMSDVSVGQSKEYVIPLQC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.5
0.73
0.7
80.8
24.3
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
47
-0.1
2.1
68.78
42.8

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407