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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37578518_37580043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37578518 - 37580043
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTGC
5'SS Class:
major
3'SS Sequence:
TCTCTAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTTCTCTAATC
Flanking Amino Acid:
HRAFTVEPTSGIIPGNGKVA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
68.2
37.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
75.7
0.58
0.9
69.4
34.4
Minor 5ss
40
-1.1
2.9
49.7
41.9
Minor BPS
65.6
0.47
1.6
74.53
36.7

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407