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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37586617_37587565_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37586617 - 37587565
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTATTCTTGACA
Flanking Amino Acid:
ARVVEEGSASGNRCFSKTEN
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.7
0.58
1
72.2
37.7
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
72.2
0.69
1.2
74.45
37.2

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407