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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37591326_37591831_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37591326 - 37591831
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTATAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GCACTTATAATT
Flanking Amino Acid:
VTQKKFLHHKEVICGVMEWR
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.5
0.64
0.9
74.7
38.8
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
47.7
-0
1.5
59.31
38.2

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407