About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37592529_37592726_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37592529 - 37592726
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTACTGATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCGTTCTCAATC
Flanking Amino Acid:
PERDRENVIDHETAETEFKV
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.3
0.53
0.9
70.8
39.6
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
60.5
0.31
1.5
65.63
40.8

Associated Gene:

Gene:
CFAP221
Ensembl Gene ID:
ENSAPLG00000009264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009632
37572365 - 37594771
22407