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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3759407_3764590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3759407 - 3764590
Intron Length:
5184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
HKLIELVGHIRVLYIGLACN
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
78.1
0.63
0.9
70.5
40.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
MFSD6
Ensembl Gene ID:
ENSAPLG00000012385
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012887
3750174 - 3766137
15964