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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37602857_37603240_F

Intron Information:

Intron Rank:
132257
Intron Class:
major
Intron Phase:
Intron Coordinates:
37602857 - 37603240
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTCCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.1
0.63
1
78.7
27.5
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
76.7
0.7
1.5
76.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019228
37602176 - 37604175
2000