About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37627328_37628417_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
37627328 - 37628417

Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCG|GTGAGTCAC

5'SS Class:
strong_major

3'SS Sequence:
GTCCTTGTTGTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TGGTCCTGTATC

Flanking Amino Acid:
AVTLFFMQKPHLEINWAGMS

Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.1
0.73
1
68.8
38

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
73.9
0.54
0.9
68.7
37.2

Minor 5ss
29.6
-2.3
2.8
36.4
40.6

Minor BPS
52.6
0.07
1.8
64.05
41.6

Associated Gene:

Gene:
ESYT3

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37614513 - 37644346
29834