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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37628474_37630554_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37628474 - 37630554
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCACCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
TTTTCCTCACCT
Flanking Amino Acid:
MSNLLDVPGINVMSDTLIQD
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
76.7
0.6
0.8
70
29.7
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
71.8
0.76
1.8
92.41
36.6

Associated Gene:

Gene:
ESYT3
Ensembl Gene ID:
ENSAPLG00000009458
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009875
37614513 - 37644346
29834