About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37635120_37636325_F


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
37635120 - 37636325

Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAAAATT

5'SS Class:
strong_major

3'SS Sequence:
TATTATACGACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATAAAT

U12 Branch Point Sequence:
TTTCCTTGTATT

Flanking Amino Acid:
KKIKNNKYLKKTEREPSSFV

Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.6
0.84
0.9
87
27.5

Major BPS
74.5
0.61
1
79.6
29.1

Major PPT
67.8
0.4
1.1
62.9
42.5

Minor 5ss
38.8
-1.3
3.2
57.6
46.6

Minor BPS
55
0.24
1.8
78.13
38

Associated Gene:

Gene:
ESYT3

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37614513 - 37644346
29834