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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37636392_37637155_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37636392 - 37637155
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AATGCCACAATC
Flanking Amino Acid:
TVGSKTHKSKTCNFSKDPTW
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
47.7
-0.1
1.9
59.49
39.4

Associated Gene:

Gene:
ESYT3
Ensembl Gene ID:
ENSAPLG00000009458
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009875
37614513 - 37644346
29834