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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37640709_37642216_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37640709 - 37642216
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTTAAAA
Flanking Amino Acid:
KKTLNPQYDEKFEFFESLED
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
65.5
0.48
1.7
77.86
38.5

Associated Gene:

Gene:
ESYT3
Ensembl Gene ID:
ENSAPLG00000009458
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009875
37614513 - 37644346
29834