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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37642980_37643833_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37642980 - 37643833
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTTTGCTTATTT
Flanking Amino Acid:
QEDLIKGFAQWYELTRSRRK
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
ESYT3
Ensembl Gene ID:
ENSAPLG00000009458
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009875
37614513 - 37644346
29834