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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37645425_37645804_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37645425 - 37645804
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTTTTCATT
Flanking Amino Acid:
ALIQDLLRLLEISNLDDILP
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
69
41.5
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
52.8
0.17
1.7
72.08
39.9

Associated Gene:

Gene:
CEP70
Ensembl Gene ID:
ENSAPLG00000009891
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010334
37645247 - 37656704
11458