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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37646850_37648162_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37646850 - 37648162
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTACCAGAAAC
Flanking Amino Acid:
MRNLHELLELDSSVPPTVVV
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
48.4
-0.1
1.9
64.07
40.1

Associated Gene:

Gene:
CEP70
Ensembl Gene ID:
ENSAPLG00000009891
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010334
37645247 - 37656704
11458