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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37649008_37649652_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37649008 - 37649652
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCCCTCTTAAAA
Flanking Amino Acid:
MWADQLMALKDLHRSLRKLT
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
65
0.34
1
67
31.7
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
61.5
0.36
1.4
65.41
41

Associated Gene:

Gene:
CEP70
Ensembl Gene ID:
ENSAPLG00000009891
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010334
37645247 - 37656704
11458