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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37649824_37650480_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37649824 - 37650480
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTTTTTTGTATT
Flanking Amino Acid:
LQAVSQQYLQVLSNIDSIIR
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
75.4
0.57
1.1
76.4
36.6
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
56.3
0.28
1.7
79.72
37

Associated Gene:

Gene:
CEP70
Ensembl Gene ID:
ENSAPLG00000009891
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010334
37645247 - 37656704
11458