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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37651761_37652387_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37651761 - 37652387
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
NANLKKDLETRPTAQELKLY
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
CEP70
Ensembl Gene ID:
ENSAPLG00000009891
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010334
37645247 - 37656704
11458