About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37655034_37655351_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
37655034 - 37655351

Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAATTCAC

5'SS Class:
strong_major

3'SS Sequence:
AATCTCTTCACAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTATAAT

U12 Branch Point Sequence:
GCTCCTATAATC

Flanking Amino Acid:
ELQKDQQVSQSKYQQQQEKL

Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.3
0.81
1
74.2
36.3

Major BPS
75.5
0.63
1.1
76
34.4

Major PPT
75.6
0.58
0.9
69
36.1

Minor 5ss
34.6
-1.8
2.9
44.3
43.4

Minor BPS
53
0.07
1.6
61.34
38.1

Associated Gene:

Gene:
CEP70

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37645247 - 37656704
11458