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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37659378_37659655_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37659378 - 37659655
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGGTCTTTATTT
Flanking Amino Acid:
GKRVVYVDGKEEIRKEWMFK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
63.6
0.5
1.6
76.16
41.2

Associated Gene:

Gene:
FAIM
Ensembl Gene ID:
ENSAPLG00000010169
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010587
37659267 - 37662715
3449