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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37659885_37661213_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37659885 - 37661213
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
LGGTDYRIVLEKDTMDVWCN
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.7
0.78
0.7
79.5
26
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
FAIM
Ensembl Gene ID:
ENSAPLG00000010169
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010587
37659267 - 37662715
3449