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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37667678_37668440_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37667678 - 37668440
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ACTTCCTTATTT
Flanking Amino Acid:
AKQEELLQLIGQPKADQLSE
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.5
30.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85.4
0.8
0.9
77.2
41.6
Minor 5ss
28.5
-2.5
2.8
32.8
42.1
Minor BPS
70.8
0.73
1.6
82.08
39.9

Associated Gene:

Gene:
PARP9
Ensembl Gene ID:
ENSAPLG00000010291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010725
37664735 - 37675436
10702